PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000038G0910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 315aa    MW: 33979.2 Da    PI: 4.3453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000038G0910genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-1987137155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrdp+    +  r++lg+f tae Aa a++ a++ l+g
  PH01000038G0910  87 TRFRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPTAEAAALAYDDAARDLRG 137
                      589*******.**********75....44************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1287137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-3188147IPR001471AP2/ERF domain
SMARTSM003802.7E-3588151IPR001471AP2/ERF domain
PROSITE profilePS5103224.09288145IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2288146IPR016177DNA-binding domain
PRINTSPR003672.6E-1089100IPR001471AP2/ERF domain
CDDcd000181.23E-1296147No hitNo description
PRINTSPR003672.6E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MCGGVILAEH IPTTPARRVT VGHLWPAGKA GKKRQRGGPA ADDFEAAFGR FDEDSEEEED  60
DEVIERKALE FGANGNGKAA SRRTKRTRFR GVRRRPWGKW AAEIRDPVKG VRVWLGTFPT  120
AEAAALAYDD AARDLRGAGA KLNFPSSSSA TACARKRRAT AAKATPYVVD LVDEEDDTPS  180
VKNEAEASES SETSSALPDF SWQGMSASDD GAAQPVHLEV ESDQSVDLGD ATKRLRIEPL  240
QTNEVLPAAS EDSDILFDDP FVFGDQFNFF NGGAYESLDS RFGGDAVQSN GAVDESLGLW  300
SFDDDCLVED SVCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1985145263ATERF1
3gcc_A1e-1985145263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036GKKRQRG
28195RRTKRTRFRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0918982e-62FP091898.1 Phyllostachys edulis cDNA clone: bphyem115l08, full insert sequence.
GenBankFP0977862e-62FP097786.1 Phyllostachys edulis cDNA clone: bphylf031b23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698500.14e-84PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBLQ2TN792e-86Q2TN79_WHEAT; Ethylene-responsive element binding protein 2
STRINGSi036118m4e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-12ethylene-responsive element binding protein